5MDN		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MG	enzyme
Gene	PCAL
Gene Ontology	Chain Function Process Component B, A DNA-directed DNA polymerase ...
Primary reference	Structure of the family B DNA polymerase from the hyperthermophilic archaeon Pyrobaculum calidifontis., Guo J, Zhang W, Coker AR, Wood SP, Cooper JB, Ahmad S, Ali S, Rashid N, Akhtar M, Acta Crystallogr D Struct Biol. 2017 May 1;73(Pt 5):420-427. doi:, 10.1107/S2059798317004090. Epub 2017 Apr 26. PMID:28471366

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (250 Kb) [Save to disk] Biological Unit Coordinates (5mdn.pdb1.gz) 124 Kb Biological Unit Coordinates (5mdn.pdb2.gz) 124 Kb LPC: Ligand-Protein Contacts for 5MDN CSU: Contacts of Structural Units for 5MDN Structure Factors (1179 Kb) Retrieve 5MDN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5MDN from S2C, [Save to disk] Re-refined 5mdn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5MDN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mdn] [5mdn_A] [5mdn_B] SWISS-PROT database:

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