5MGZ Transferase date Nov 22, 2016
title Streptomyces Spheroides Novo (8-Demethylnovbiocic Acid Methyltransferase) With Sah
authors C.W.Chung, J.Mosley, J.C.Sadler
compound source
Molecule: 8-Demethylnovobiocic Acid C(8)-Methyltransferase
Chain: A, B
Synonym: Novobiocin Biosynthesis Protein O
Ec: 2.1.1.284
Engineered: Yes
Other_details: Sah
Organism_scientific: Streptomyces Niveus
Organism_taxid: 193462
Gene: Novo
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b+
symmetry Space Group: P 1 21 1
R_factor 0.178 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.724 66.970 80.563 90.00 92.99 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ACT, GOL, SAH enzyme Transferase E.C.2.1.1.284 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural and Functional Basis of C-Methylation of Coumarin Scaffolds by NovO., Sadler JC, Chung CH, Mosley JE, Burley GA, Humphreys LD, ACS Chem Biol. 2017 Jan 13. doi: 10.1021/acschembio.6b01053. PMID:28068060
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (5mgz.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 5MGZ
  • CSU: Contacts of Structural Units for 5MGZ
  • Structure Factors (982 Kb)
  • Retrieve 5MGZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MGZ from S2C, [Save to disk]
  • Re-refined 5mgz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MGZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MGZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mgz_B] [5mgz_A] [5mgz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MGZ
  • Community annotation for 5MGZ at PDBWiki (http://pdbwiki.org)

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