5MII Hydrolase date Nov 28, 2016
title Crystal Structure Of Carboxyl Esterase 2 (Tmelest2) From Myc Fungus Tuber Melanosporum
authors G.Zanotti, F.Vallese, D.Cavazzini, S.Ottonello
compound source
Molecule: Carboxyl Esterase 2
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Tuber Melanosporum (Strain Mel28)
Organism_common: Perigord Black Truffle
Organism_taxid: 656061
Strain: Mel28
Gene: Gstum_00003552001
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codonplus-Ril
symmetry Space Group: P 65 2 2
R_factor 0.194 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
157.931 157.931 231.410 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.37 Å
ligand SEB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA family of archaea-like carboxylesterases preferentially expressed in the symbiotic phase of the mychorrizal fungus Tuber melanosporum., Cavazzini D, Grossi G, Levati E, Vallese F, Montanini B, Bolchi A, Zanotti G, Ottonello S, Sci Rep. 2017 Aug 9;7(1):7628. doi: 10.1038/s41598-017-08007-9. PMID:28794466
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (207 Kb) [Save to disk]
  • Biological Unit Coordinates (5mii.pdb1.gz) 101 Kb
  • Biological Unit Coordinates (5mii.pdb2.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 5MII
  • CSU: Contacts of Structural Units for 5MII
  • Structure Factors (1095 Kb)
  • Retrieve 5MII in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MII from S2C, [Save to disk]
  • View 5MII in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MII
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mii_D] [5mii_B] [5mii_C] [5mii_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MII
  • Community annotation for 5MII at PDBWiki (http://pdbwiki.org)

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