5MJM Photosynthesis date Dec 01, 2016
title Single-Shot Pink Beam Serial Crystallography: Phycocyanin (F Merged)
authors A.Meents, D.Oberthuer, J.Lieske, V.Srajer, I.Sarrou
compound source
Molecule: C-Phycocyanin Alpha Chain
Chain: A
 Organism_scientific: Thermosynechococcus Elongatus (Strain
Organism_taxid: 197221
Strain: Bp-1
Variant: Bp-1

Molecule: C-Phycocyanin Beta Chain
Chain: B
Mutation: Yes
Organism_scientific: Thermosynechococcus Elongatus (Strain
Organism_taxid: 197221
Strain: Bp-1
Variant: Bp-1
symmetry Space Group: H 3 2
R_factor 0.139 R_Free 0.181
crystal
cell
length a length b length c angle alpha angle beta angle gamma
187.800 187.800 60.700 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand CYC, MEN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referencePink-beam serial crystallography., Meents A, Wiedorn MO, Srajer V, Henning R, Sarrou I, Bergtholdt J, Barthelmess M, Reinke PYA, Dierksmeyer D, Tolstikova A, Schaible S, Messerschmidt M, Ogata CM, Kissick DJ, Taft MH, Manstein DJ, Lieske J, Oberthuer D, Fischetti RF, Chapman HN, Nat Commun. 2017 Nov 3;8(1):1281. doi: 10.1038/s41467-017-01417-3. PMID:29097720
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (5mjm.pdb1.gz) 944 Kb
  • LPC: Ligand-Protein Contacts for 5MJM
  • CSU: Contacts of Structural Units for 5MJM
  • Structure Factors (319 Kb)
  • Retrieve 5MJM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MJM from S2C, [Save to disk]
    • View 5MJM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MJM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mjm_A] [5mjm_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MJM
  • Community annotation for 5MJM at PDBWiki (http://pdbwiki.org)

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