5MKX 1.68A STRUCTURE PCAF BROMODOMAIN WITH 4-chloro-2-methyl-5-(methylamino)pyridazin-3(2H)-one date
authors Chung, C.W.
compound source
symmetry
R_factor
R_Free 0.20645
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.68
ligand 82I, BU1, EPE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of a Potent, Cell Penetrant, and Selective p300/CBP-Associated Factor (PCAF)/General Control Nonderepressible 5 (GCN5) Bromodomain Chemical Probe., Humphreys PG, Bamborough P, Chung CW, Craggs PD, Gordon L, Grandi P, Hayhow TG, Hussain J, Jones KL, Lindon M, Michon AM, Renaux JF, Suckling CJ, Tough DF, Prinjha RK, J Med Chem. 2017 Jan 26;60(2):695-709. doi: 10.1021/acs.jmedchem.6b01566. Epub, 2017 Jan 9. PMID:28002667
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (5mkx.pdb1.gz) 42 Kb
  • Biological Unit Coordinates (5mkx.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 5MKX
  • CSU: Contacts of Structural Units for 5MKX
  • Structure Factors (1166 Kb)
  • Retrieve 5MKX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MKX from S2C, [Save to disk]
    • View 5MKX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MKX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mkx_B] [5mkx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MKX
  • Community annotation for 5MKX at PDBWiki (http://pdbwiki.org)

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