5MLZ Membrane Protein date Dec 08, 2016
title Dolichyl Phosphate Mannose Synthase In Complex With Gdp And
authors R.Gandini, T.Reichenbach, T.C.Tan, C.Divne
compound source
Molecule: Dolichol Monophosphate Mannose Synthase
Chain: A
Engineered: Yes
Other_details: N-Terminal Hexa-Histdine Tag And Tev Proteas Site Precedes The Protein Sequences
Organism_scientific: Pyrococcus Furiosus (Strain Atcc 43587 3638 Jcm 8422 Vc1);
Organism_taxid: 186497
Gene: Pf0058
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: C 2 2 21
R_factor 0.241 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.870 146.210 95.350 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL, GDP, LDA, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • dolichyl-phosphate beta-D-ma...


  • Primary referenceStructural basis for dolichylphosphate mannose biosynthesis., Gandini R, Reichenbach T, Tan TC, Divne C, Nat Commun. 2017 Jul 25;8(1):120. doi: 10.1038/s41467-017-00187-2. PMID:28743912
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (5mlz.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 5MLZ
  • CSU: Contacts of Structural Units for 5MLZ
  • Structure Factors (375 Kb)
  • Retrieve 5MLZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MLZ from S2C, [Save to disk]
  • View 5MLZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 5MLZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mlz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mlz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MLZ
  • Community annotation for 5MLZ at PDBWiki (http://pdbwiki.org)

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