5MNX Hydrolase date Dec 13, 2016
title Neutron Structure Of Cationic Trypsin In Complex With 2-Amin
authors J.Schiebel, T.E.Schrader, A.Ostermann, A.Heine, G.Klebe
compound source
Molecule: Cationic Trypsin
Chain: A
Synonym: Beta-Trypsin
Ec: 3.4.21.4
 Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.166 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.096 58.701 67.631 90.00 90.00 90.00
method Neutron Diffractionresolution 1.42 Å
ligand 2AP, CA enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCharges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin., Schiebel J, Gaspari R, Sandner A, Ngo K, Gerber HD, Cavalli A, Ostermann A, Heine A, Klebe G, Angew Chem Int Ed Engl. 2017 Apr 18;56(17):4887-4890. doi:, 10.1002/anie.201701038. Epub 2017 Mar 28. PMID:28371253
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (5mnx.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 5MNX
  • CSU: Contacts of Structural Units for 5MNX
  • Structure Factors (634 Kb)
  • Retrieve 5MNX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MNX from S2C, [Save to disk]
    • View 5MNX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MNX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mnx] [5mnx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MNX
  • Community annotation for 5MNX at PDBWiki (http://pdbwiki.org)

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