5MO0 Hydrolase date Dec 13, 2016
title Neutron Structure Of Cationic Trypsin In Complex With Benzam
authors J.Schiebel, T.E.Schrader, A.Ostermann, A.Heine, G.Klebe
compound source
Molecule: Cationic Trypsin
Chain: A
Synonym: Beta-Trypsin
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.147 R_Free 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.912 58.686 67.516 90.00 90.00 90.00
method Neutron Diffractionresolution 1.50 Å
ligand BAM, BEN, CA enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIntriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes., Schiebel J, Gaspari R, Wulsdorf T, Ngo K, Sohn C, Schrader TE, Cavalli A, Ostermann A, Heine A, Klebe G, Nat Commun. 2018 Sep 3;9(1):3559. doi: 10.1038/s41467-018-05769-2. PMID:30177695
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (5mo0.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 5MO0
  • CSU: Contacts of Structural Units for 5MO0
  • Structure Factors (578 Kb)
  • Retrieve 5MO0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MO0 from S2C, [Save to disk]
  • View 5MO0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MO0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mo0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MO0
  • Community annotation for 5MO0 at PDBWiki (http://pdbwiki.org)

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