5MOQ Hydrolase date Dec 14, 2016
title Joint X-Rayneutron Structure Of Cationic Trypsin In Complex Benzamidine
authors J.Schiebel, T.E.Schrader, A.Ostermann, A.Heine, G.Klebe
compound source
Molecule: Cationic Trypsin
Chain: A
Synonym: Beta-Trypsin
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.150 R_Free 0.167
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.901 58.614 67.604 90.00 90.00 90.00
method X-Ray Diffraction; Neutron Diffractionresolution 0.93 Å
ligand BAM, BEN, CA, SO4 enzyme Hydrolase E.C.3.4.21.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIntriguing role of water in protein-ligand binding studied by neutron crystallography on trypsin complexes., Schiebel J, Gaspari R, Wulsdorf T, Ngo K, Sohn C, Schrader TE, Cavalli A, Ostermann A, Heine A, Klebe G, Nat Commun. 2018 Sep 3;9(1):3559. doi: 10.1038/s41467-018-05769-2. PMID:30177695
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (5moq.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 5MOQ
  • CSU: Contacts of Structural Units for 5MOQ
  • Structure Factors (2070 Kb)
  • Retrieve 5MOQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MOQ from S2C, [Save to disk]
  • View 5MOQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MOQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5moq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MOQ
  • Community annotation for 5MOQ at PDBWiki (http://pdbwiki.org)

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