OCA Atlas for 5MPP

5MPP

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene

Gene
Ontology

Chain	Function	Process	Component
u, 3, j, 0, m, f, Q, a, b, l, 8, g, U, k, W, Y, D, O, 9, 4, S, H, q, h, T, p, B, 5, I, C, o, s, w, 1, K, 2, F, v, P, d, i, N, n, Z, e, E, t, r, A, 6, c, R, V, L, M, G, x, X, J, 7

Primary reference

Structure and assembly of scalable porous protein cages., Sasaki E, Bohringer D, van de Waterbeemd M, Leibundgut M, Zschoche R, Heck AJ, Ban N, Hilvert D, Nat Commun. 2017 Mar 10;8:14663. doi: 10.1038/ncomms14663. PMID:28281548

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1397 Kb) [Save to disk]

Biological Unit Coordinates (5mpp.pdb1.gz) 1393 Kb

CSU: Contacts of Structural Units for 5MPP

Retrieve 5MPP in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5MPP from S2C, [Save to disk]

View 5MPP in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mpp_8] [5mpp_9] [5mpp_A] [5mpp_B] [5mpp_C] [5mpp_D] [5mpp_E] [5mpp_F] [5mpp_G] [5mpp_H] [5mpp] [5mpp_0] [5mpp_1] [5mpp_2] [5mpp_3] [5mpp_4] [5mpp_5] [5mpp_6] [5mpp_7] [5mpp_I] [5mpp_J] [5mpp_K] [5mpp_L] [5mpp_M] [5mpp_N] [5mpp_O] [5mpp_P] [5mpp_Q] [5mpp_R] [5mpp_S] [5mpp_T] [5mpp_U] [5mpp_V] [5mpp_W] [5mpp_X] [5mpp_Y] [5mpp_Z] [5mpp_a] [5mpp_b] [5mpp_c] [5mpp_d] [5mpp_e] [5mpp_f] [5mpp_g] [5mpp_h] [5mpp_i] [5mpp_j] [5mpp_k] [5mpp_l] [5mpp_m] [5mpp_n] [5mpp_o] [5mpp_p] [5mpp_q] [5mpp_r] [5mpp_s] [5mpp_t] [5mpp_u] [5mpp_v] [5mpp_w] [5mpp_x]

SWISS-PROT database:

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