5MPZ Transcription date Dec 19, 2016
title Crystal Structure Of Crebbp Bromodomain Complexed With Cbp00
authors J.Zhu, D.Spiliotopoulos, A.Caflisch
compound source
Molecule: Creb-Binding Protein
Chain: A
Fragment: Bromodomain, Unp Residues 1081-1197
Ec: 2.3.1.48
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Crebbp, Cbp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 21 21 21
R_factor 0.158 R_Free 0.176
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.057 44.658 60.211 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand 4I8 enzyme Transferase E.C.2.3.1.48 BRENDA
Primary referenceVirtual screen to NMR (VS2NMR): Discovery of fragment hits for the CBP bromodomain., Spiliotopoulos D, Zhu J, Wamhoff EC, Deerain N, Marchand JR, Aretz J, Rademacher C, Caflisch A, Bioorg Med Chem Lett. 2017 Apr 4. pii: S0960-894X(17)30364-5. doi:, 10.1016/j.bmcl.2017.04.001. PMID:28410781
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (5mpz.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 5MPZ
  • CSU: Contacts of Structural Units for 5MPZ
  • Structure Factors (399 Kb)
  • Retrieve 5MPZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MPZ from S2C, [Save to disk]
  • Re-refined 5mpz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5MPZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MPZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mpz] [5mpz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MPZ
  • Community annotation for 5MPZ at PDBWiki (http://pdbwiki.org)

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