5MT3 Hormone date Jan 06, 2017
title Human Insulin In Complex With Serotonin And Arginine
authors A.M.Brzozowski, J.P.Turkenburg, J.Jiracek, L.Zakova
compound source
Molecule: Insulin
Chain: A, C, E, G, I, K, M, O, Q, S, U, W, Y, a, c, e
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Insulin
Chain: B, D, F, H, J, L, N, P, R, T, V, X, Z, b, d, f
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: H 3
R_factor 0.236 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.640 158.640 76.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.02 Å
ligand ARG, CL, SRO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, a, K, Y, E, e, W, c, I, G, U, Q, M, C, A, O


T, N, d, Z, J, B, H, b, D, F, V, L, f, X, P, R


Primary referenceComputational and Structural Evidence for Neurotransmitter-mediated Modulation of the Oligomeric States of Human Insulin in Storage Granules., Palivec V, Viola CM, Kozak M, Ganderton TR, Krizkova K, Turkenburg JP, Haluskova P, Zakova L, Jiracek J, Jungwirth P, Brzozowski AM, J Biol Chem. 2017 Mar 27. pii: jbc.M117.775924. doi: 10.1074/jbc.M117.775924. PMID:28348075
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (5mt3.pdb1.gz) 46 Kb
  • Biological Unit Coordinates (5mt3.pdb2.gz) 51 Kb
  • Biological Unit Coordinates (5mt3.pdb3.gz) 50 Kb
  • Biological Unit Coordinates (5mt3.pdb4.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 5MT3
  • CSU: Contacts of Structural Units for 5MT3
  • Structure Factors (357 Kb)
  • Retrieve 5MT3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MT3 from S2C, [Save to disk]
  • Re-refined 5mt3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MT3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MT3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mt3_J] [5mt3_e] [5mt3_D] [5mt3_d] [5mt3_E] [5mt3_Z] [5mt3_R] [5mt3] [5mt3_C] [5mt3_U] [5mt3_L] [5mt3_H] [5mt3_I] [5mt3_A] [5mt3_M] [5mt3_F] [5mt3_a] [5mt3_S] [5mt3_W] [5mt3_O] [5mt3_T] [5mt3_G] [5mt3_K] [5mt3_f] [5mt3_X] [5mt3_c] [5mt3_Y] [5mt3_b] [5mt3_P] [5mt3_Q] [5mt3_B] [5mt3_V] [5mt3_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MT3
  • Community annotation for 5MT3 at PDBWiki (http://pdbwiki.org)

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