5MV4	Immune System	date	Jan 15, 2017
title	Acc1 Fab Fragment In Complex With Citrullinated Cii616-639 E Collagen Type II (Ptm23)
authors	D.Dobritzsch, R.Holmdahl, C.Ge
compound		source
Molecule: Acc1 Antibody Fab Fragment, Heavy Chain Chain: A, C, F, I, L, O, R, U		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Strain: B10.Riii.Cia5 Cell_line: B Cell Hybridoma
Molecule: Acc1 Antibody Fab Fragment, Light Chain Chain: B, D, G, J, M, P, S, V		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Strain: B10.Riii.Cia5 Cell_line: B Cell Hybridoma
Molecule: Synthetic Peptide Containing The Citrullinated Co Type II Epitope Cii616-639,Collagen Alpha-1(II) Chain,Synth Peptide Containing The Citrullinated Collagen Type II Epito 639; Chain: X, E, H, K, N, Q, T, W Synonym: Alpha-1 Type II Collagen Engineered: Yes Other_details: The Synthesized Peptide Is (Homo)Trimeric An Helical In Solution; One Of The Component Single Chains Sho Contain The "Lysine Knot" Sequence Extension Kkyg To Promot Crosslinking Between The C-Termini Of The Three Chains; The Biotinylated For Purification Purposes		Synthetic: Yes Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090
symmetry	Space Group: P 1 21 1	R_factor 0.232 R_Free 0.247
crystal cell	length a length b length c angle alpha angle beta angle gamma 119.238 91.601 182.357 90.00 91.52 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	HYP, SO4	enzyme
Primary reference	Anti-citrullinated protein antibodies cause arthritis by cross-reactivity to joint cartilage., Ge C, Tong D, Liang B, Lonnblom E, Schneider N, Hagert C, Viljanen J, Ayoglu B, Stawikowska R, Nilsson P, Fields GB, Skogh T, Kastbom A, Kihlberg J, Burkhardt H, Dobritzsch D, Holmdahl R, JCI Insight. 2017 Jul 6;2(13). pii: 93688. doi: 10.1172/jci.insight.93688. PMID:28679953

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1130 Kb) [Save to disk] Biological Unit Coordinates (5mv4.pdb1.gz) 148 Kb Biological Unit Coordinates (5mv4.pdb2.gz) 148 Kb Biological Unit Coordinates (5mv4.pdb3.gz) 148 Kb Biological Unit Coordinates (5mv4.pdb4.gz) 147 Kb Biological Unit Coordinates (5mv4.pdb5.gz) 149 Kb Biological Unit Coordinates (5mv4.pdb6.gz) 148 Kb Biological Unit Coordinates (5mv4.pdb7.gz) 149 Kb Biological Unit Coordinates (5mv4.pdb8.gz) 150 Kb LPC: Ligand-Protein Contacts for 5MV4 CSU: Contacts of Structural Units for 5MV4 Structure Factors (3444 Kb) Retrieve 5MV4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5MV4 from S2C, [Save to disk] Re-refined 5mv4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5MV4 in 3D

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Visual 3D analysis of 5MV4

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5mv4_E] [5mv4_R] [5mv4_S] [5mv4_U] [5mv4_O] [5mv4_P] [5mv4_F] [5mv4_K] [5mv4_A] [5mv4_I] [5mv4_H] [5mv4_L] [5mv4_T] [5mv4_D] [5mv4_M] [5mv4_C] [5mv4_N] [5mv4_J] [5mv4_X] [5mv4_V] [5mv4_B] [5mv4_G] [5mv4_Q] [5mv4_W] SWISS-PROT database: Domain organization of by SWISSPFAM

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