5MYN Transcription date Jan 27, 2017
title Structure Of Transcriptional Regulatory Repressor Protein - Mycobacterium Tuberculosis In Complex With Compound Gsk4458 1.56a Resolution
authors M.Blaszczyk, V.Mendes, G.Mugumbate, T.L.Blundell
compound source
Molecule: Hth-Type Transcriptional Regulator Ethr
Chain: A
Engineered: Yes
 Organism_scientific: Mycobacterium Tuberculosis (Strain Atc H37rv);
Organism_taxid: 83332
Strain: Atcc 25618 H37rv
Gene: Ethr, Etar, Rv3855
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 41 21 2
R_factor 0.170 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.813 121.813 33.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.56 Å
ligand ZUF enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTarget Identification of Mycobacterium tuberculosis Phenotypic Hits Using a Concerted Chemogenomic, Biophysical, and Structural Approach., Mugumbate G, Mendes V, Blaszczyk M, Sabbah M, Papadatos G, Lelievre J, Ballell L, Barros D, Abell C, Blundell TL, Overington JP, Front Pharmacol. 2017 Sep 26;8:681. doi: 10.3389/fphar.2017.00681. eCollection, 2017. PMID:29018348
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (5myn.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 5MYN
  • CSU: Contacts of Structural Units for 5MYN
  • Structure Factors (1453 Kb)
  • Retrieve 5MYN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MYN from S2C, [Save to disk]
    • View 5MYN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5MYN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5myn_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5MYN
  • Community annotation for 5MYN at PDBWiki (http://pdbwiki.org)

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