5N2Q	Dna Binding Protein	date	Feb 08, 2017
title	Mobm Relaxase Domain (Mobv; Mob_pre) Bound To 26nt Pmv158 Or
authors	S.Russi, D.R.Boer, M.Coll
compound		source
Molecule: Plasmid Recombination Enzyme Chain: A Synonym: Mobilization Protein Engineered: Yes		Organism_scientific: Streptococcus Agalactiae Organism_taxid: 1311 Gene: Pre, Mob Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (26-Mer) Chain: B Engineered: Yes		Organism_scientific: Plasmid Pmv158 Organism_taxid: 2606 Expression_system: Synthetic Construct Expression_system_taxid: 32630
symmetry	Space Group: P 1 21 1	R_factor 0.166 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.576 52.853 56.035 90.00 95.88 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	CL, GOL, MG, MSE, NA	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis of a histidine-DNA nicking/joining mechanism for gene transfer and promiscuous spread of antibiotic resistance., Pluta R, Boer DR, Lorenzo-Diaz F, Russi S, Gomez H, Fernandez-Lopez C, Perez-Luque R, Orozco M, Espinosa M, Coll M, Proc Natl Acad Sci U S A. 2017 Aug 8;114(32):E6526-E6535. doi:, 10.1073/pnas.1702971114. Epub 2017 Jul 24. PMID:28739894

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk] Biological Unit Coordinates (5n2q.pdb1.gz) 47 Kb LPC: Ligand-Protein Contacts for 5N2Q CSU: Contacts of Structural Units for 5N2Q Structure Factors (465 Kb) Retrieve 5N2Q in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5N2Q from S2C, [Save to disk] Re-refined 5n2q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5N2Q in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5N2Q

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5n2q] [5n2q_A] [5n2q_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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