5N3P Transferase date Feb 08, 2017
title Camp-Dependent Protein Kinase A From Cricetulus Griseus In C With Fragment Like Molecule 1h-Indol-5-Ol
authors C.Siefker, A.Heine, G.Klebe
compound source
Molecule: Camp-Dependent Protein Kinase Catalytic Subunit A
Chain: A
Synonym: Pka C-Alpha
Ec: 2.7.11.11
Engineered: Yes
Other_details: Phosphorylation Of S140, T198 And S339
 Organism_scientific: Cricetulus Griseus
Organism_common: Chinese Hamster
Organism_taxid: 10029
Gene: Prkaca
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-16btev
symmetry Space Group: P 21 21 21
R_factor 0.158 R_Free 0.181
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.763 71.711 97.668 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.58 Å
ligand 5H1, DMS, MPD, SEP, TPO enzyme Transferase E.C.2.7.11.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (180 Kb) [Save to disk]
  • Biological Unit Coordinates (5n3p.pdb1.gz) 174 Kb
  • LPC: Ligand-Protein Contacts for 5N3P
  • CSU: Contacts of Structural Units for 5N3P
  • Structure Factors (349 Kb)
  • Retrieve 5N3P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N3P from S2C, [Save to disk]
    • View 5N3P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5N3P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n3p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5N3P
  • Community annotation for 5N3P at PDBWiki (http://pdbwiki.org)

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