5N9N Transferase date Feb 25, 2017
title Crystal Structure Of Human Protein Kinase Ck2 Catalytic Subu Complex With The Atp-Competitive, Tight-Binding Dibenzofura Inhibitor Tf85 (4a)
authors A.Schnitzler, A.Gratz, A.Bollacke, M.Weyrich, U.Kucklaender, B.Wu C.Goetz, K.Niefind, J.Jose
compound source
Molecule: Casein Kinase II Subunit Alpha
Chain: A
Fragment: Unp Residues 1-335
Synonym: Ck II Alpha
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csnk2a1, Ck2a1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.167 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.477 45.505 63.489 90.00 110.97 90.00
method X-Ray Diffractionresolution 1.84 Å
ligand ACT, GOL, KC5 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA pi-Halogen Bond of Dibenzofuranones with the Gatekeeper Phe113 in Human Protein Kinase CK2 Leads to Potent Tight Binding Inhibitors., Schnitzler A, Gratz A, Bollacke A, Weyrich M, Kucklander U, Wunsch B, Gotz C, Niefind K, Jose J, Pharmaceuticals (Basel). 2018 Feb 17;11(1). pii: ph11010023. doi:, 10.3390/ph11010023. PMID:29462988
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (5n9n.pdb1.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 5N9N
  • CSU: Contacts of Structural Units for 5N9N
  • Structure Factors (242 Kb)
  • Retrieve 5N9N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N9N from S2C, [Save to disk]
  • View 5N9N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5N9N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n9n_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5N9N
  • Community annotation for 5N9N at PDBWiki (http://pdbwiki.org)

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