5NEU Virus date Mar 11, 2017
title Localised Reconstruction Of Integrin Alpha V Beta 6 Bound To Mouth Disease Virus O1 Manisa - Pose B.
authors A.Kotecha, D.Stuart
compound source
Molecule: O1 Manisa Vp1
Chain: 1
Engineered: Yes
Organism_scientific: Foot-And-Mouth Disease Virus
Organism_taxid: 12110
Expression_system: Cricetinae Gen. Sp.
Expression_system_taxid: 36483

Molecule: O1 Manisa Vp2
Chain: 2
Engineered: Yes
Mutation: Yes

Organism_scientific: Foot-And-Mouth Disease Virus
Organism_taxid: 12110
Expression_system: Cricetinae Gen. Sp.
Expression_system_taxid: 36483

Molecule: Capsid Protein
Chain: 3
Engineered: Yes

Organism_scientific: Foot-And-Mouth Disease Virus
Organism_taxid: 12110
Expression_system: Cricetinae Gen. Sp.
Expression_system_taxid: 36483

Molecule: O1 Manisa Vp4
Chain: 4
Engineered: Yes

Organism_scientific: Foot-And-Mouth Disease Virus
Organism_taxid: 12110
Expression_system: Cricetinae Gen. Sp.
Expression_system_taxid: 36483

Molecule: Integrin Alpha-V
Chain: A
Synonym: Vitronectin Receptor Subunit Alpha
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgav, Msk8, Vnra
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s

Molecule: Integrin Beta-6
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgb6
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 12.30 Å
ligand CA, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
1


3, 2


4


A


B


Primary referenceRules of engagement between alphavbeta6 integrin and foot-and-mouth disease virus., Kotecha A, Wang Q, Dong X, Ilca SL, Ondiviela M, Zihe R, Seago J, Charleston B, Fry EE, Abrescia NGA, Springer TA, Huiskonen JT, Stuart DI, Nat Commun. 2017 May 23;8:15408. doi: 10.1038/ncomms15408. PMID:28534487
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (269 Kb) [Save to disk]
  • Biological Unit Coordinates (5neu.pdb1.gz) 15368 Kb
  • LPC: Ligand-Protein Contacts for 5NEU
  • CSU: Contacts of Structural Units for 5NEU
  • Retrieve 5NEU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NEU from S2C, [Save to disk]
  • View 5NEU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NEU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5neu_3] [5neu_2] [5neu_B] [5neu_4] [5neu_1] [5neu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NEU
  • Community annotation for 5NEU at PDBWiki (http://pdbwiki.org)

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