5NF0	Antimicrobial Protein	date	Mar 13, 2017
title	Discovery, Crystal Structures And Atomic Force Microscopy St Thioether Ligated D,L-Cyclic Antimicrobial Peptides Against Resistant Pseudomonas Aeruginosa
authors	J.L.Reymond, T.Darbre, A.Stocker, W.Hong, C.Van Delden, T.Koehle A.Luscher, R.Visini, Y.Fu, I.Di Bonaventura, R.He
compound		source
Molecule: Fucose-Binding Lectin II (Pa-Iil) Chain: A, B, C, D Synonym: Fucose-Binding Lectin Pa-Iil Engineered: Yes		Organism_scientific: Pseudomonas Aeruginosa Organism_taxid: 287 Gene: Lecb, Paerug_e15_london_28_01_14_00983, Paerug_p32_london_17_vim_2_10_11_00423, Pamh19_1713; Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Cyd-Trp-Trd-Lys-Lyd-Lys-Lyd-Lys-Trd-Trp-Cyd-Gly Chain: E, G, H Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Fragment Of Ligand Chain: F Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 21 21 21	R_factor 0.163 R_Free 0.185
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.278 99.966 106.611 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.27 Å
ligand	CA, DCY, DLY, DTR, NH2, OXE, ZDC	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Design, crystal structure and atomic force microscopy study of thioether ligated d,l-cyclic antimicrobial peptides against multidrug resistant Pseudomonas aeruginosa., He R, Di Bonaventura I, Visini R, Gan BH, Fu Y, Probst D, Luscher A, Kohler T, van Delden C, Stocker A, Hong W, Darbre T, Reymond JL, Chem Sci. 2017 Nov 1;8(11):7464-7475. doi: 10.1039/c7sc01599b. Epub 2017 Sep 4. PMID:29163899

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (5nf0.pdb1.gz) 84 Kb LPC: Ligand-Protein Contacts for 5NF0 CSU: Contacts of Structural Units for 5NF0 Structure Factors (2669 Kb) Retrieve 5NF0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NF0 from S2C, [Save to disk]

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Visual 3D analysis of 5NF0

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5nf0_G] [5nf0_A] [5nf0_H] [5nf0_C] [5nf0_B] [5nf0_E] [5nf0_D] [5nf0_F] SWISS-PROT database: Domain organization of by SWISSPFAM

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