5NIR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand EDO, P33, PEG, PG4 enzyme
Primary referenceStructural analyses of von Willebrand factor C domains of collagen 2A and CCN3 reveal an alternative mode of binding to bone morphogenetic protein-2., Xu ER, Blythe EE, Fischer G, Hyvonen M, J Biol Chem. 2017 Jul 28;292(30):12516-12527. doi: 10.1074/jbc.M117.788992. Epub , 2017 Jun 5. PMID:28584056
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (5nir.pdb1.gz) 14 Kb
  • Biological Unit Coordinates (5nir.pdb2.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 5NIR
  • CSU: Contacts of Structural Units for 5NIR
  • Structure Factors (567 Kb)
  • Retrieve 5NIR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NIR from S2C, [Save to disk]
  • Re-refined 5nir structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5NIR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nir_A] [5nir_B]
  • SWISS-PROT database:

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