5NK0 Transferase date Mar 31, 2017
title Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kina Compound 1j
authors D.Kudlinzki, V.L.Linhard, K.Witt, S.L.Gande, K.Saxena, S.Heinzlme G.Medard, B.Kuester, H.Schwalbe
compound source
Molecule: Ephrin Type-A Receptor 2
Chain: A
Synonym: Epithelial Cell Kinase,Tyrosine-Protein Kinase Rec
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Epha2, Eck
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.164 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.318 104.838 39.259 90.00 94.53 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand 91E enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceChemoproteomics-Aided Medicinal Chemistry for the Discovery of EPHA2 Inhibitors., Heinzlmeir S, Lohse J, Treiber T, Kudlinzki D, Linhard V, Gande SL, Sreeramulu S, Saxena K, Liu X, Wilhelm M, Schwalbe H, Kuster B, Medard G, ChemMedChem. 2017 Jun 21;12(12):999-1011. doi: 10.1002/cmdc.201700217. Epub 2017 , Jun 12. PMID:28544567
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (5nk0.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 5NK0
  • CSU: Contacts of Structural Units for 5NK0
  • Structure Factors (225 Kb)
  • Retrieve 5NK0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NK0 from S2C, [Save to disk]
  • Re-refined 5nk0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5NK0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NK0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5nk0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nk0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NK0
  • Community annotation for 5NK0 at PDBWiki (http://pdbwiki.org)

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