5NKX Viral Protein date Apr 03, 2017
title Hrsv M2-1 Core Domain, P3221 Crystal Form
authors Y.Almeida Hernandez, I.Josts, I.G.Molina, G.De Pray-Gay, H.Tidow
compound source
Molecule: M2-1
Chain: A, B
Synonym: Matrix Protein 2-1,Transcription Elongation Factor
Engineered: Yes
 Organism_scientific: Human Respiratory Syncytial Virus
Organism_taxid: 11250
Gene: M2-1, M2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.190 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.949 91.949 97.799 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and stability of the Human respiratory syncytial virus M2-1 RNA-binding core domain reveals a compact and cooperative folding unit., Molina IG, Josts I, Almeida Hernandez Y, Esperante S, Salgueiro M, Garcia Alai MM, de Prat-Gay G, Tidow H, Acta Crystallogr F Struct Biol Commun. 2018 Jan 1;74(Pt 1):23-30. doi:, 10.1107/S2053230X17017381. Epub 2017 Dec 15. PMID:29372904
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (5nkx.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (5nkx.pdb2.gz) 18 Kb
  • CSU: Contacts of Structural Units for 5NKX
  • Structure Factors (235 Kb)
  • Retrieve 5NKX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NKX from S2C, [Save to disk]
    • View 5NKX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NKX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nkx_B] [5nkx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NKX
  • Community annotation for 5NKX at PDBWiki (http://pdbwiki.org)

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