5NKY	Gene Regulation	date	Apr 03, 2017
title	Structure-Activity Relationship Study Of Vitamin D Analogs W Oxolane Group In Their Side Chain
authors	N.Rochel, A.Y.Belorusova
compound		source
Molecule: Vitamin D3 Receptor A Chain: A Synonym: Vdr-A,1,25-Dihydroxyvitamin D3 Receptor A,Nuclear Subfamily 1 Group I Member 1-A; Engineered: Yes		Organism_scientific: Danio Rerio Organism_common: Zebrafish Organism_taxid: 7955 Gene: Vdra, Nr1i1a, Vdr Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Src1 Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 65 2 2	R_factor 0.226 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.191 66.191 261.698 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	91W	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structure-activity relationship study of vitamin D analogs with oxolane group in their side chain., Belorusova AY, Martinez A, Gandara Z, Gomez G, Fall Y, Rochel N, Eur J Med Chem. 2017 Jul 7;134:86-96. doi: 10.1016/j.ejmech.2017.03.081. Epub, 2017 Apr 2. PMID:28399453

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (5nky.pdb1.gz) 81 Kb LPC: Ligand-Protein Contacts for 5NKY CSU: Contacts of Structural Units for 5NKY Structure Factors (461 Kb) Retrieve 5NKY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NKY from S2C, [Save to disk] Re-refined 5nky structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5nky_B] [5nky] [5nky_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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