5NM3	Transferase	date	Apr 05, 2017
title	Deinococcus Radiodurans Bphp Pas-Gaf-Phy Y263f Mutant, Pre-I
authors	H.Takala, S.Westehoff, J.A.Ihalainen
compound		source
Molecule: Bacteriophytochrome Chain: A, B, C, D Synonym: Phytochrome-Like Protein Ec: 2.7.13.3 Engineered: Yes Mutation: Yes		Organism_scientific: Deinococcus Radiodurans (Strain Atcc 1 Dsm 20539 Jcm 16871 Lmg 4051 Nbrc 15346 Ncimb 9279 Vkm B-1422); Organism_taxid: 243230 Atcc: 13939 Gene: Bphp, Dr_a0050 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21b
symmetry	Space Group: P 21 21 21	R_factor 0.234 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 85.700 198.500 223.600 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.30 Å
ligand	LBV	enzyme	Transferase E.C.2.7.13.3 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	On the (un)coupling of the chromophore, tongue interactions and overall conformation in a bacterial phytochrome., Takala H, Lehtivuori H, Berntsson O, Hughes A, Nanekar R, Niebling S, Panman M, Henry L, Menzel A, Westenhoff S, Ihalainen JA, J Biol Chem. 2018 Apr 5. pii: RA118.001794. doi: 10.1074/jbc.RA118.001794. PMID:29622676

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (311 Kb) [Save to disk] Biological Unit Coordinates (5nm3.pdb1.gz) 155 Kb Biological Unit Coordinates (5nm3.pdb2.gz) 153 Kb LPC: Ligand-Protein Contacts for 5NM3 CSU: Contacts of Structural Units for 5NM3 Structure Factors (1619 Kb) Retrieve 5NM3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NM3 from S2C, [Save to disk]

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Visual 3D analysis of 5NM3

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5nm3_D] [5nm3_A] [5nm3_B] [5nm3_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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