5NMD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	EDO, SO4	enzyme
Primary reference	Dual Molecular Mechanisms Govern Escape at Immunodominant HLA A2-Restricted HIV Epitope., Cole DK, Fuller A, Dolton G, Zervoudi E, Legut M, Miles K, Blanchfield L, Madura F, Holland CJ, Bulek AM, Bridgeman JS, Miles JJ, Schauenburg AJA, Beck K, Evavold BD, Rizkallah PJ, Sewell AK, Front Immunol. 2017 Nov 10;8:1503. doi: 10.3389/fimmu.2017.01503. eCollection, 2017. PMID:29209312

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (300 Kb) [Save to disk] Biological Unit Coordinates (5nmd.pdb1.gz) 150 Kb Biological Unit Coordinates (5nmd.pdb2.gz) 148 Kb LPC: Ligand-Protein Contacts for 5NMD CSU: Contacts of Structural Units for 5NMD Structure Factors (2461 Kb) Retrieve 5NMD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NMD from S2C, [Save to disk]

View 5NMD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5nmd_A] [5nmd_B] [5nmd_C] [5nmd_D] SWISS-PROT database:

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