5NP2 Transferase date Apr 13, 2017
title Abl1 Sh3 Ptyr89134
authors B.Mero, L.Radnai, G.Gogl, I.Leveles, L.Buday
compound source
Molecule: Tyrosine-Protein Kinase Abl1
Chain: A, B
Synonym: Abelson Murine Leukemia Viral Oncogene Homolog 1,A Tyrosine-Protein Kinase 1,Proto-Oncogene C-Abl,P150;
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Abl1, Abl, Jtk7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.189 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.630 83.180 57.870 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand PTR enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insights into the tyrosine phosphorylation-mediated inhibition of SH3 domain-ligand interactions., Mero B, Radnai L, Gogl G, Toke O, Leveles I, Koprivanacz K, Szeder B, Dulk M, Kudlik G, Vas V, Cserkaszky A, Sipeki S, Nyitray L, Vertessy BG, Buday L, J Biol Chem. 2019 Jan 18. pii: RA118.004732. doi: 10.1074/jbc.RA118.004732. PMID:30659095
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (5np2.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (5np2.pdb2.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 5NP2
  • CSU: Contacts of Structural Units for 5NP2
  • Structure Factors (431 Kb)
  • Retrieve 5NP2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NP2 from S2C, [Save to disk]
  • View 5NP2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NP2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5np2_A] [5np2_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NP2
  • Community annotation for 5NP2 at PDBWiki (http://pdbwiki.org)

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