5NPK	Isomerase	date	Apr 17, 2017
title	1.98a Structure Of Thiophene1 With S.Aureus Dna Gyrase And D
authors	B.D.Bax, P.F.Chan, R.A.Stavenger
compound		source
Molecule: Dna Gyrase Subunit B,Dna Gyrase Subunit B,Dna Gyr Subunit A; Chain: B, D, b, d Ec: 5.99.1.3,5.99.1.3,5.99.1.3 Engineered: Yes		Organism_scientific: Staphylococcus Aureus Organism_taxid: 158879 Strain: N315 Gene: Gyrb, Sa0005, Gyra, Sa0006 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'- D(Apgpcpcpgptpapgpgptpapcpcptpapcpgpgpcp Chain: E, F, e, f Engineered: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Synthetic Construct Expression_system_taxid: 32630
symmetry	Space Group: P 1 21 1	R_factor 0.154 R_Free 0.183
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.442 120.680 168.899 90.00 90.05 90.00
method	X-Ray Diffraction	resolution	1.98 Å
ligand	94H, 9JN, CL, GOL, MN, NA, SO4	enzyme	Isomerase E.C.5.99.1.3 BRENDA
Gene Ontology	Chain Function Process Component b, D, d, B
Primary reference	Thiophene antibacterials that allosterically stabilize DNA-cleavage complexes with DNA gyrase., Chan PF, Germe T, Bax BD, Huang J, Thalji RK, Bacque E, Checchia A, Chen D, Cui H, Ding X, Ingraham K, McCloskey L, Raha K, Srikannathasan V, Maxwell A, Stavenger RA, Proc Natl Acad Sci U S A. 2017 May 30;114(22):E4492-E4500. doi:, 10.1073/pnas.1700721114. Epub 2017 May 15. PMID:28507124

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1050 Kb) [Save to disk] Biological Unit Coordinates (5npk.pdb1.gz) 514 Kb Biological Unit Coordinates (5npk.pdb2.gz) 528 Kb LPC: Ligand-Protein Contacts for 5NPK CSU: Contacts of Structural Units for 5NPK Structure Factors (3940 Kb) Retrieve 5NPK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NPK from S2C, [Save to disk] Re-refined 5npk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5NPK in 3D

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Visual 3D analysis of 5NPK

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5npk_D] [5npk_B] [5npk_d] [5npk_E] [5npk_e] [5npk_f] [5npk_b] [5npk_F] SWISS-PROT database: Domain organization of by SWISSPFAM

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