5NPU date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MG, PEG, TPP enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, A, D, B


Primary referenceCrystal structure of an inferred ancestral bacterial pyruvate decarboxylase., Buddrus L, Andrews ESV, Leak DJ, Danson MJ, Arcus VL, Crennell SJ, Acta Crystallogr F Struct Biol Commun. 2018 Mar 1;74(Pt 3):179-186. doi:, 10.1107/S2053230X18002819. Epub 2018 Feb 26. PMID:29497023
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1023 Kb) [Save to disk]
  • Biological Unit Coordinates (5npu.pdb1.gz) 255 Kb
  • Biological Unit Coordinates (5npu.pdb2.gz) 257 Kb
  • Biological Unit Coordinates (5npu.pdb3.gz) 261 Kb
  • Biological Unit Coordinates (5npu.pdb4.gz) 259 Kb
  • LPC: Ligand-Protein Contacts for 5NPU
  • CSU: Contacts of Structural Units for 5NPU
  • Structure Factors (1337 Kb)
  • Retrieve 5NPU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NPU from S2C, [Save to disk]
  • View 5NPU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5npu_A] [5npu_B] [5npu_C] [5npu_D]
  • SWISS-PROT database:

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