5NRO Chaperone date Apr 25, 2017
title Structure Of Full-Length Dnak With Bound J-Domain
authors J.Kopp, R.Kityk, M.P.Mayer
compound source
Molecule: Chaperone Protein Dnak
Chain: A
Synonym: Hsp70,Heat Shock 70 Kda Protein,Heat Shock Protein
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Dnak, Grop, Grpf, Seg, B0014, Jw0013
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Chaperone Protein Dnaj
Chain: B
Synonym: Hsp40,Heat Shock Protein J
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Dnaj, Grop, B0015, Jw0014
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 62 2 2
R_factor 0.216 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
127.246 127.246 252.885 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.25 Å
ligand ATP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • sigma factor antagonist acti...


  • Primary referenceMolecular Mechanism of J-Domain-Triggered ATP Hydrolysis by Hsp70 Chaperones., Kityk R, Kopp J, Mayer MP, Mol Cell. 2017 Dec 27. pii: S1097-2765(17)30931-0. doi:, 10.1016/j.molcel.2017.12.003. PMID:29290615
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk]
  • Biological Unit Coordinates (5nro.pdb1.gz) 217 Kb
  • LPC: Ligand-Protein Contacts for 5NRO
  • CSU: Contacts of Structural Units for 5NRO
  • Structure Factors (754 Kb)
  • Retrieve 5NRO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NRO from S2C, [Save to disk]
  • View 5NRO in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NRO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nro_A] [5nro_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NRO
  • Community annotation for 5NRO at PDBWiki (http://pdbwiki.org)

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