5NVK	Translation	date	May 04, 2017
title	Crystal Structure Of The Human 4ehp-Gigyf1 Complex
authors	D.Peter, E.Valkov
compound		source
Molecule: Eukaryotic Translation Initiation Factor 4e Type Chain: A, C, E, G Synonym: Eif4e Type 2,Eukaryotic Translation Initiation Fac Homologous Protein,Eukaryotic Translation Initiation Factor 3,Eif4e-Like Protein 4e-Lp,Mrna Cap-Binding Protein 4ehp,H4 Cap-Binding Protein Type 3; Engineered: Yes Other_details: The First Residue Of The Coordinate Sequence G Belongs To The Expression Tag;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Eif4e2, Eif4el3 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Star
Molecule: Grb10-Interacting Gyf Protein 1 Chain: B, D, F, H Synonym: Perq Amino Acid-Rich With Gyf Domain-Containing Pr Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Gigyf1, Cds2, Perq1, Pp3360 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Star
symmetry	Space Group: P 42	R_factor 0.204 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 135.320 135.320 60.910 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
Gene Ontology	Chain Function Process Component A, C, G, E
Primary reference	GIGYF1/2 proteins use auxiliary sequences to selectively bind to 4EHP and repress target mRNA expression., Peter D, Weber R, Sandmeir F, Wohlbold L, Helms S, Bawankar P, Valkov E, Igreja C, Izaurralde E, Genes Dev. 2017 Jun 1;31(11):1147-1161. doi: 10.1101/gad.299420.117. Epub 2017, Jul 11. PMID:28698298

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (475 Kb) [Save to disk] Biological Unit Coordinates (5nvk.pdb1.gz) 118 Kb Biological Unit Coordinates (5nvk.pdb2.gz) 122 Kb Biological Unit Coordinates (5nvk.pdb3.gz) 118 Kb Biological Unit Coordinates (5nvk.pdb4.gz) 118 Kb CSU: Contacts of Structural Units for 5NVK Structure Factors (230 Kb) Retrieve 5NVK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NVK from S2C, [Save to disk] Re-refined 5nvk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5NVK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5NVK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5nvk_G] [5nvk_H] [5nvk_C] [5nvk_E] [5nvk_B] [5nvk_F] [5nvk_A] [5nvk_D] SWISS-PROT database: Domain organization of by SWISSPFAM

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