OCA Atlas for 5NW1

5NW1

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

9BH, CAS

enzyme

Gene
Ontology

Chain	Function	Process	Component
H, E, K, B
J, D, G, A

Primary reference

Group-Based Optimization of Potent and Cell-Active Inhibitors of the von Hippel-Lindau (VHL) E3 Ubiquitin Ligase: Structure-Activity Relationships Leading to the Chemical Probe (2S,4R)-1-((S)-2-(1-Cyanocyclopropanecarboxamido)-3,3-dimethylbutanoyl)-4-hydroxy -N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (VH298)., Soares P, Gadd MS, Frost J, Galdeano C, Ellis L, Epemolu O, Rocha S, Read KD, Ciulli A, J Med Chem. 2017 Sep 18. doi: 10.1021/acs.jmedchem.7b00675. PMID:28853884

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (467 Kb) [Save to disk]

Biological Unit Coordinates (5nw1.pdb1.gz) 118 Kb

Biological Unit Coordinates (5nw1.pdb2.gz) 118 Kb

Biological Unit Coordinates (5nw1.pdb3.gz) 118 Kb

Biological Unit Coordinates (5nw1.pdb4.gz) 119 Kb

LPC: Ligand-Protein Contacts for 5NW1

CSU: Contacts of Structural Units for 5NW1

Structure Factors (2835 Kb)

Retrieve 5NW1 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5NW1 from S2C, [Save to disk]

View 5NW1 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5nw1_A] [5nw1_B] [5nw1_C] [5nw1_D] [5nw1_E] [5nw1_F] [5nw1_G] [5nw1_H] [5nw1_I] [5nw1_J] [5nw1_K] [5nw1_L]

SWISS-PROT database:

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