5NY3 Lyase date May 11, 2017
title Carbonic Anhydrase II Inhibitor Ra11
authors J.Brynda, P.Rezacova, M.Horejsi, J.Fanfrlik
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II,Carbonic Anhydrase C,Cac, Anhydrase II,Ca-II;
Ec: 4.2.1.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.156 R_Free 0.172
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.193 41.355 72.098 90.00 104.40 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand 9E8, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRanking Power of the SQM/COSMO Scoring Function on Carbonic Anhydrase II-Inhibitor Complexes., Pecina A, Brynda J, Vrzal L, Gnanasekaran R, Horejsi M, Eyrilmez S, Rezac J, Lepsik M, Rezacova P, Hobza P, Majer P, Veverka V, Fanfrlik J, Chemphyschem. 2018 Jan 8. doi: 10.1002/cphc.201701104. PMID:29316128
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (5ny3.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 5NY3
  • CSU: Contacts of Structural Units for 5NY3
  • Structure Factors (1106 Kb)
  • Retrieve 5NY3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NY3 from S2C, [Save to disk]
    • View 5NY3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5NY3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ny3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5NY3
  • Community annotation for 5NY3 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science