5O0B Transferase date May 16, 2017
title Crystal Structure Of Phosphopantetheine Adenylyltransferase Mycobacterium Abcessus In Complex With 3-Bromo-1h-Indazole- Carboxylic Acid (Fragment 2)
authors S.E.Thomas, S.Y.Kim, V.Mendes, M.Blaszczyk, T.L.Blundell
compound source
Molecule: Phosphopantetheine Adenylyltransferase
Chain: A, B, C
Synonym: Dephospho-Coa Pyrophosphorylase,Pantetheine-Phosph Adenylyltransferase,Ppat;
Ec: 2.7.7.3
Engineered: Yes
 Organism_scientific: Mycobacterium Abscessus (Strain Atcc 1 Dsm 44196 Cip 104536 Jcm 13569 Nctc 13031 Tmc 1543)
Organism_taxid: 561007
Gene: Coad, Mab_3259c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: C 2 2 21
R_factor 0.198 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.069 125.171 119.435 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.74 Å
ligand 9FE enzyme Transferase E.C.2.7.7.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceStructural Biology and the Design of New Therapeutics: From HIV and Cancer to Mycobacterial Infections: A Paper Dedicated to John Kendrew., Thomas SE, Mendes V, Kim SY, Malhotra S, Ochoa-Montano B, Blaszczyk M, Blundell TL, J Mol Biol. 2017 Aug 18;429(17):2677-2693. doi: 10.1016/j.jmb.2017.06.014. Epub, 2017 Jun 23. PMID:28648615
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (5o0b.pdb1.gz) 160 Kb
  • LPC: Ligand-Protein Contacts for 5O0B
  • CSU: Contacts of Structural Units for 5O0B
  • Structure Factors (2576 Kb)
  • Retrieve 5O0B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O0B from S2C, [Save to disk]
  • Re-refined 5o0b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5O0B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5O0B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o0b_B] [5o0b_A] [5o0b_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5O0B
  • Community annotation for 5O0B at PDBWiki (http://pdbwiki.org)

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