5O6I Dna Binding Protein date Jun 06, 2017
title Structures And Dynamics Of Mesophilic Variants From The Homi Endonuclease I-Dmoi
authors R.Molina, M.J.Marcaida
compound source
Molecule: Homing Endonuclease I-Dmoi
Chain: A, F, K
Ec: 3.1.-.-
Engineered: Yes
 Organism_scientific: Desulfurococcus Mucosus
Organism_taxid: 2275
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (25-Mer)
Chain: C, G, L
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (25-Mer)
Chain: D, I, N
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 1 21 1
R_factor 0.196 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.000 70.480 107.320 90.00 119.81 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand CL, MN enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, K
  • nuclease activity
  • endonuclease activity


    • Primary referenceStructure and dynamics of mesophilic variants from the homing endonuclease I-DmoI., Alba J, Marcaida MJ, Prieto J, Montoya G, Molina R, D'Abramo M, J Comput Aided Mol Des. 2017 Nov 25. pii: 10.1007/s10822-017-0087-5. doi:, 10.1007/s10822-017-0087-5. PMID:29177929
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (5o6i.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (5o6i.pdb2.gz) 54 Kb
  • Biological Unit Coordinates (5o6i.pdb3.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 5O6I
  • CSU: Contacts of Structural Units for 5O6I
  • Structure Factors (703 Kb)
  • Retrieve 5O6I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O6I from S2C, [Save to disk]
    • View 5O6I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5O6I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o6i_N] [5o6i_F] [5o6i_D] [5o6i_C] [5o6i_L] [5o6i_I] [5o6i_K] [5o6i_G] [5o6i_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5O6I
  • Community annotation for 5O6I at PDBWiki (http://pdbwiki.org)

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