5O83 Transferase date Jun 12, 2017
title Discovery Of Cdz173 (Leniolisib), Representing A Structurall Class Of Pi3k Delta-Selective Inhibitors
authors S.Gutmann, G.Rummel, B.Shrestha
compound source
Molecule: Phosphatidylinositol 4,5-Bisphosphate 3-Kinase Ca Subunit Delta Isoform;
Chain: A
Synonym: Ptdins-3-Kinase Subunit Delta,Phosphatidylinositol Bisphosphate 3-Kinase 110 Kda Catalytic Subunit Delta,P110d
Ec: 2.7.1.153
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Pik3cd
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_strain: Sf9-De
symmetry Space Group: C 1 2 1
R_factor 0.230 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
142.120 63.990 116.540 90.00 102.89 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand 9NQ enzyme Transferase E.C.2.7.1.153 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of CDZ173 (Leniolisib), Representing a Structurally Novel Class of PI3K Delta-Selective Inhibitors., Hoegenauer K, Soldermann N, Zecri F, Strang RS, Graveleau N, Wolf RM, Cooke NG, Smith AB, Hollingworth GJ, Blanz J, Gutmann S, Rummel G, Littlewood-Evans A, Burkhart C, ACS Med Chem Lett. 2017 Aug 25;8(9):975-980. doi: 10.1021/acsmedchemlett.7b00293., eCollection 2017 Sep 14. PMID:28947947
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (5o83.pdb1.gz) 239 Kb
  • LPC: Ligand-Protein Contacts for 5O83
  • CSU: Contacts of Structural Units for 5O83
  • Structure Factors (497 Kb)
  • Retrieve 5O83 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5O83 from S2C, [Save to disk]
  • View 5O83 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5O83
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5o83_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5O83
  • Community annotation for 5O83 at PDBWiki (http://pdbwiki.org)

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