5OAV Transferase date Jun 23, 2017
title High Resolution Crystal Structure Of The C-Src-Sh3 Domain Mu In Complex With The High Affinity Synthetic Peptide App12: Crystal
authors A.Camara-Artigas
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Src
Chain: A, C
Fragment: Sh3 Domain, Unp Residues 85-141
Synonym: Proto-Oncogene C-Src,Pp60c-Src,P60-Src
Ec: 2.7.10.2
Engineered: Yes
Mutation: Yes
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Src
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: App12
Chain: B, D
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.141 R_Free 0.160
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.804 31.801 61.634 90.00 127.83 90.00
method X-Ray Diffractionresolution 0.95 Å
ligand ACE enzyme Transferase E.C.2.7.10.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (5oav.pdb1.gz) 34 Kb
  • Biological Unit Coordinates (5oav.pdb2.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 5OAV
  • CSU: Contacts of Structural Units for 5OAV
  • Structure Factors (2629 Kb)
  • Retrieve 5OAV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OAV from S2C, [Save to disk]
  • Re-refined 5oav structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5OAV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5OAV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oav_D] [5oav_C] [5oav_A] [5oav_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5OAV
  • Community annotation for 5OAV at PDBWiki (http://pdbwiki.org)

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