5ODI date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 9S8, ACT, COM, FAD, FE, FES, GOL, NFU, PE3, SF4, TRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
G, A


H, B


I, C


J, D


K, E


L, F


Primary referenceMethanogenic heterodisulfide reductase (HdrABC-MvhAGD) uses two noncubane [4Fe-4S] clusters for reduction., Wagner T, Koch J, Ermler U, Shima S, Science. 2017 Aug 18;357(6352):699-703. doi: 10.1126/science.aan0425. PMID:28818947
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1335 Kb) [Save to disk]
  • Biological Unit Coordinates (5odi.pdb1.gz) 1318 Kb
  • LPC: Ligand-Protein Contacts for 5ODI
  • CSU: Contacts of Structural Units for 5ODI
  • Structure Factors (8376 Kb)
  • Retrieve 5ODI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ODI from S2C, [Save to disk]
  • View 5ODI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5odi_A] [5odi_B] [5odi_C] [5odi_D] [5odi_E] [5odi_F] [5odi_G] [5odi_H] [5odi_I] [5odi_J] [5odi_K] [5odi_L]
  • SWISS-PROT database:

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