OCA Atlas for 5ODV

5ODV

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
M, G, N, I, Q, T, S, H, C, X, W, F, U, A, O, D, L, P, V, B, J, R, E, K

Primary reference

Potyvirus virion structure shows conserved protein fold and RNA binding site in ssRNA viruses., Zamora M, Mendez-Lopez E, Agirrezabala X, Cuesta R, Lavin JL, Sanchez-Pina MA, Aranda MA, Valle M, Sci Adv. 2017 Sep 20;3(9):eaao2182. doi: 10.1126/sciadv.aao2182. eCollection 2017, Sep. PMID:28948231

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1415 Kb) [Save to disk]

Biological Unit Coordinates (5odv.pdb1.gz) 1405 Kb

CSU: Contacts of Structural Units for 5ODV

Retrieve 5ODV in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5ODV from S2C, [Save to disk]

View 5ODV in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5odv_D] [5odv_W] [5odv_V] [5odv_X] [5odv_A] [5odv_B] [5odv_C] [5odv_E] [5odv_F] [5odv_G] [5odv_H] [5odv_I] [5odv_J] [5odv_K] [5odv_L] [5odv_M] [5odv_N] [5odv_O] [5odv_P] [5odv_Q] [5odv_R] [5odv_S] [5odv_T] [5odv_U] [5odv_a] [5odv_b] [5odv_c] [5odv_d] [5odv_e] [5odv_f] [5odv_g] [5odv_h] [5odv_i] [5odv_j] [5odv_k] [5odv_l] [5odv_m] [5odv_n] [5odv_o] [5odv_p] [5odv_q] [5odv_r] [5odv_s] [5odv_t] [5odv_u] [5odv_v] [5odv_w] [5odv_x]

SWISS-PROT database:

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