5OHF Transferase date Jul 16, 2017
title Globin Sensor Domain Of Afgchk (Feiii Form) In Complex With Partially Reduced
authors T.Skalova, P.Kolenko, J.Dohnalek, M.Stranava, M.Martinkova
compound source
Molecule: Globin-Coupled Histidine Kinase
Chain: A, B, C, D, E, F, G, H
Synonym: Afgchk,Heme-Based Oxygen-Sensor Histidine Kinase
Ec: 2.7.13.3
Engineered: Yes
Organism_scientific: Anaeromyxobacter Sp. (Strain Fw109-5)
Organism_taxid: 404589
Gene: Gchk, Anae109_2438
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet21c(+)
symmetry Space Group: P 41 21 2
R_factor 0.190 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.685 77.685 441.238 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CL, CYN, HEM, NA enzyme Transferase E.C.2.7.13.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceCoordination and redox state-dependent structural changes of the heme-based oxygen sensor AfGcHK associated with intraprotein signal transduction., Stranava M, Man P, Skalova T, Kolenko P, Blaha J, Fojtikova V, Martinek V, Dohnalek J, Lengalova A, Rosulek M, Shimizu T, Martinkova M, J Biol Chem. 2017 Nov 1. pii: jbc.M117.817023. doi: 10.1074/jbc.M117.817023. PMID:29092908
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (5ohf.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (5ohf.pdb2.gz) 60 Kb
  • Biological Unit Coordinates (5ohf.pdb3.gz) 61 Kb
  • Biological Unit Coordinates (5ohf.pdb4.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 5OHF
  • CSU: Contacts of Structural Units for 5OHF
  • Structure Factors (5456 Kb)
  • Retrieve 5OHF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OHF from S2C, [Save to disk]
  • View 5OHF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OHF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ohf_E] [5ohf_B] [5ohf_H] [5ohf_F] [5ohf_G] [5ohf_A] [5ohf_D] [5ohf_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OHF
  • Community annotation for 5OHF at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science