5OM1 Membrane Protein date Jul 28, 2017
title Structure Of The A2a-Star2-Bril562-Compound 4e Complex At 2. Obtained From In Meso Soaking Experiments (1 Hour Soak).
authors P.Rucktooa, R.K.Y.Cheng, E.Segala, T.Geng, J.C.Errey, G.A.Brown, R F.H.Marshall, A.S.Dore
compound source
Molecule: Adenosine Receptor A2a,Soluble Cytochrome B562,Ad Receptor A2a;
Chain: A
Synonym: Cytochrome B-562
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Escherichia Coli
Organism_common: Human
Organism_taxid: 9606, 562
Gene: Adora2a, Adora2, Cybc
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_vector_type: Virus
symmetry Space Group: C 2 2 21
R_factor 0.188 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.537 179.854 140.323 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CL, CLR, NA, OLA, OLC, T4E enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTowards high throughput GPCR crystallography: In Meso soaking of Adenosine A2A Receptor crystals., Rucktooa P, Cheng RKY, Segala E, Geng T, Errey JC, Brown GA, Cooke RM, Marshall FH, Dore AS, Sci Rep. 2018 Jan 8;8(1):41. doi: 10.1038/s41598-017-18570-w. PMID:29311713
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk]
  • Biological Unit Coordinates (5om1.pdb1.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 5OM1
  • CSU: Contacts of Structural Units for 5OM1
  • Structure Factors (1336 Kb)
  • Retrieve 5OM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OM1 from S2C, [Save to disk]
  • View 5OM1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OM1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5om1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OM1
  • Community annotation for 5OM1 at PDBWiki (http://pdbwiki.org)

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