5OM9 Crystal structure of the human CARBOXYPEPTIDASE A1 in complex with a thiirane mechanism-based inhibitor date
authors Gallego, P., Granados, C., Fernandez, D., Pallares, I., Covaleda, G., Aviles, F.X., Vendrell, J., Reverter, D.
compound source
symmetry
R_factor
R_Free 0.21178
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand O2S, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of Mechanism-Based Inactivators for Human Pancreatic Carboxypeptidase A from a Focused Synthetic Library., Testero SA, Granados C, Fernandez D, Gallego P, Covaleda G, Reverter D, Vendrell J, Aviles FX, Pallares I, Mobashery S, ACS Med Chem Lett. 2017 Sep 22;8(10):1122-1127. doi:, 10.1021/acsmedchemlett.7b00346. eCollection 2017 Oct 12. PMID:29057062
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk]
  • Biological Unit Coordinates (5om9.pdb1.gz) 268 Kb
  • LPC: Ligand-Protein Contacts for 5OM9
  • CSU: Contacts of Structural Units for 5OM9
  • Structure Factors (1104 Kb)
  • Retrieve 5OM9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OM9 from S2C, [Save to disk]
    • View 5OM9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5OM9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5om9_B] [5om9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5OM9
  • Community annotation for 5OM9 at PDBWiki (http://pdbwiki.org)

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