5OMR Oxidoreductase date Aug 01, 2017
title Crystal Structure Of Amycolatopsis Cytochrome P450 Gcoa In C With Vanillin.
authors S.J.B.Mallinson, C.W.Johnson, E.L.Neidle, G.T.Beckham, J.E.Mcgee
compound source
Molecule: Gcoa
Chain: A
Synonym: Cytochrome P450
Engineered: Yes
Organism_scientific: Amycolatopsis Sp. Atcc 39116
Organism_taxid: 385957
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.147 R_Free 0.170
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.110 104.110 115.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.68 Å
ligand HEM, V55 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA promiscuous cytochrome P450 aromatic O-demethylase for lignin bioconversion., Mallinson SJB, Machovina MM, Silveira RL, Garcia-Borras M, Gallup N, Johnson CW, Allen MD, Skaf MS, Crowley MF, Neidle EL, Houk KN, Beckham GT, DuBois JL, McGeehan JE, Nat Commun. 2018 Jun 27;9(1):2487. doi: 10.1038/s41467-018-04878-2. PMID:29950589
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (5omr.pdb1.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 5OMR
  • CSU: Contacts of Structural Units for 5OMR
  • Structure Factors (741 Kb)
  • Retrieve 5OMR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OMR from S2C, [Save to disk]
  • View 5OMR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OMR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5omr_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OMR
  • Community annotation for 5OMR at PDBWiki (http://pdbwiki.org)

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