5ONA	Gene Regulation	date	Aug 03, 2017
title	Drosophila Bag-Of-Marbles Cbm Peptide Bound To Human Caf40-C
authors	T.Raisch, A.Sgromo, C.Backhaus, E.Izaurralde, O.Weichenrieder
compound		source
Molecule: Ccr4-Not Transcription Complex Subunit 1 Chain: A, D Synonym: Ccr4-Associated Factor 1,Negative Regulator Of Tra Subunit 1 Homolog,Hnot1; Engineered: Yes Other_details: The First 6 Residues (Gphmle) Remain From Th Cleavage Site And The Linker.;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cnot1, Cdc39, Kiaa1007, Not1, Ad-005 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Petmcn (Pnyc)
Molecule: Ccr4-Not Transcription Complex Subunit 9 Chain: B, E Synonym: Cell Differentiation Protein Rqcd1 Homolog,Rcd-1 Engineered: Yes Other_details: The First 6 Residues (Gphmle) Remain From Th Cleavage Site And The Linker.;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cnot9, Rcd1, Rqcd1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Petmcn (Pnea)
Molecule: Protein Bag-Of-Marbles Chain: C, F Engineered: Yes		Synthetic: Yes Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227
symmetry	Space Group: P 32 2 1	R_factor 0.209 R_Free 0.237
crystal cell	length a length b length c angle alpha angle beta angle gamma 106.600 106.600 263.430 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	CL, SO4	enzyme
Gene Ontology	Chain Function Process Component A, D E, B
Primary reference	Drosophila Bag-of-marbles directly interacts with the CAF40 subunit of the CCR4-NOT complex to elicit repression of mRNA targets., Sgromo A, Raisch T, Backhaus C, Keskeny C, Alva V, Weichenrieder O, Izaurralde E, RNA. 2017 Dec 18. pii: rna.064584.117. doi: 10.1261/rna.064584.117. PMID:29255063

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (360 Kb) [Save to disk] Biological Unit Coordinates (5ona.pdb1.gz) 178 Kb Biological Unit Coordinates (5ona.pdb2.gz) 178 Kb LPC: Ligand-Protein Contacts for 5ONA CSU: Contacts of Structural Units for 5ONA Structure Factors (446 Kb) Retrieve 5ONA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5ONA from S2C, [Save to disk]

View 5ONA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5ONA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ona_C] [5ona_D] [5ona_B] [5ona_A] [5ona_F] [5ona_E] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5ONA

Community annotation for 5ONA at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---