5OOM Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA date
authors Brown, A., Rathore, S., Kimanius, D., Aibara, S., Bai, X.C., Rorbach, J., Amunts, A., Ramakrishnan, V.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.03
ligand MG, PNS, ZN enzyme
Gene
Ontology
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  • nuclease activity
  • endonuclease activity
  • ribonuclease III activity


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    Primary referenceStructures of the human mitochondrial ribosome in native states of assembly., Brown A, Rathore S, Kimanius D, Aibara S, Bai XC, Rorbach J, Amunts A, Ramakrishnan V, Nat Struct Mol Biol. 2017 Sep 11. doi: 10.1038/nsmb.3464. PMID:28892042
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1620 Kb) [Save to disk]
  • Biological Unit Coordinates (5oom.pdb1.gz) 1595 Kb
  • LPC: Ligand-Protein Contacts for 5OOM
  • CSU: Contacts of Structural Units for 5OOM
  • Retrieve 5OOM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OOM from S2C, [Save to disk]
    • View 5OOM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5OOM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oom_Z] [5oom_o] [5oom_J] [5oom_X] [5oom_L] [5oom_e] [5oom_O] [5oom_h] [5oom_6] [5oom_k] [5oom_P] [5oom_B] [5oom_j] [5oom_1] [5oom_Y] [5oom_3] [5oom_w] [5oom_F] [5oom_p] [5oom_E] [5oom_l] [5oom_c] [5oom_A] [5oom_v] [5oom_5] [5oom_7] [5oom_S] [5oom_M] [5oom_q] [5oom_g] [5oom_8] [5oom_u] [5oom_d] [5oom_m] [5oom_W] [5oom_9] [5oom_N] [5oom_K] [5oom_i] [5oom_Q] [5oom_H] [5oom_R] [5oom_I] [5oom_V] [5oom_f] [5oom_U] [5oom_a] [5oom_b] [5oom_r] [5oom_2] [5oom_0] [5oom_s] [5oom_T] [5oom_D] [5oom_t]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5OOM
  • Community annotation for 5OOM at PDBWiki (http://pdbwiki.org)

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