5OP5 Transferase date Aug 09, 2017
title Structure Of Chk1 10-Pt. Mutant Complex With Pyrrolopyrimidi Inhibitor
authors P.Dokurno, D.S.Williamson, P.Acheson-Dossang, I.Chen, J.B.Murray A.E.Surgenor
compound source
Molecule: Serinethreonine-Protein Kinase Chk1
Chain: A
Synonym: Chk1 Checkpoint Homolog,Cell Cycle Checkpoint Kina Checkpoint Kinase-1;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Chek1, Chk1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1
symmetry Space Group: P 1 21 1
R_factor 0.160 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.940 65.790 54.310 90.00 101.47 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 3FE, CL enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign of Leucine-Rich Repeat Kinase 2 (LRRK2) Inhibitors Using a Crystallographic Surrogate Derived from Checkpoint Kinase 1 (CHK1)., Williamson DS, Smith GP, Acheson-Dossang P, Bedford ST, Chell V, Chen IJ, Daechsel JCA, Daniels Z, David L, Dokurno P, Hentzer M, Herzig MC, Hubbard RE, Moore JD, Murray JB, Newland S, Ray SC, Shaw T, Surgenor AE, Terry L, Thirstrup K, Wang Y, Christensen KV, J Med Chem. 2017 Oct 12. doi: 10.1021/acs.jmedchem.7b01186. PMID:29023112
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (5op5.pdb1.gz) 47 Kb
  • LPC: Ligand-Protein Contacts for 5OP5
  • CSU: Contacts of Structural Units for 5OP5
  • Structure Factors (638 Kb)
  • Retrieve 5OP5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OP5 from S2C, [Save to disk]
  • View 5OP5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OP5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5op5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OP5
  • Community annotation for 5OP5 at PDBWiki (http://pdbwiki.org)

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