5OPX Crystal structure of the GroEL mutant A109C in complex with GroES and ADP BeF2 date
authors Yan, X., Shi, Q., Bracher, A., Milicic, G., Singh, A.K., Hartl, F.U., Hayer-Hartl, M.
compound source
symmetry
R_factor
R_Free 0.2560
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.64
ligand ADP, BEF, K, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, M, C, L, A, J, B, H, D, I, G


S, T, Y, 2, V, Z, Q, 1, O, W, X, P, R, U


Primary referenceGroEL Ring Separation and Exchange in the Chaperonin Reaction., Yan X, Shi Q, Bracher A, Milicic G, Singh AK, Hartl FU, Hayer-Hartl M, Cell. 2017 Dec 26. pii: S0092-8674(17)31490-3. doi: 10.1016/j.cell.2017.12.010. PMID:29336887
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2788 Kb) [Save to disk]
  • Biological Unit Coordinates (5opx.pdb1.gz) 2759 Kb
  • LPC: Ligand-Protein Contacts for 5OPX
  • CSU: Contacts of Structural Units for 5OPX
  • Structure Factors (4095 Kb)
  • Retrieve 5OPX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OPX from S2C, [Save to disk]
  • View 5OPX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OPX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5opx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5opx_F] [5opx_T] [5opx_A] [5opx_K] [5opx_U] [5opx_N] [5opx_W] [5opx_H] [5opx_Z] [5opx_I] [5opx_1] [5opx_O] [5opx_Y] [5opx_C] [5opx_R] [5opx_X] [5opx_G] [5opx_M] [5opx_E] [5opx_Q] [5opx_L] [5opx_2] [5opx_D] [5opx_S] [5opx_J] [5opx_V] [5opx_P] [5opx_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OPX
  • Community annotation for 5OPX at PDBWiki (http://pdbwiki.org)

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