5OQ4 Transferase date Aug 10, 2017
title Pqr309 - A Potent, Brain-Penetrant, Orally Bioavailable, Pan Pi3kmtor Inhibitor As Clinical Candidate In Oncology
authors R.L.Williams, X.Zhang
compound source
Molecule: Phosphatidylinositol 4,5-Bisphosphate 3-Kinase Ca Subunit Gamma Isoform;
Chain: A
Synonym: Ptdins-3-Kinase Subunit Gamma,Phosphatidylinositol Bisphosphate 3-Kinase 110 Kda Catalytic Subunit Gamma,P110g Phosphoinositide-3-Kinase Catalytic Gamma Polypeptide, Serinethreonine Protein Kinase Pik3cg,P120-Pi3k;
Ec: 2.7.1.153,2.7.11.1
Engineered: Yes
Mutation: Yes
Other_details: Pi3k Gamma With Residues 1-143 Truncated
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pik3cg
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
symmetry Space Group: C 1 2 1
R_factor 0.196 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.490 67.360 103.610 90.00 96.94 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand A3W, SO4 enzyme Transferase E.C.2.7.1.153 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference5-(4,6-Dimorpholino-1,3,5-triazin-2-yl)-4-(trifluoromethyl)pyridin-2-amine (PQR309), a Potent, Brain-Penetrant, Orally Bioavailable, Pan-Class I PI3K/mTOR Inhibitor as Clinical Candidate in Oncology., Beaufils F, Cmiljanovic N, Cmiljanovic V, Bohnacker T, Melone A, Marone R, Jackson E, Zhang X, Sele A, Borsari C, Mestan J, Hebeisen P, Hillmann P, Giese B, Zvelebil M, Fabbro D, Williams RL, Rageot D, Wymann MP, J Med Chem. 2017 Sep 1. doi: 10.1021/acs.jmedchem.7b00930. PMID:28829592
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk]
  • Biological Unit Coordinates (5oq4.pdb1.gz) 280 Kb
  • LPC: Ligand-Protein Contacts for 5OQ4
  • CSU: Contacts of Structural Units for 5OQ4
  • Structure Factors (953 Kb)
  • Retrieve 5OQ4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OQ4 from S2C, [Save to disk]
  • View 5OQ4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OQ4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oq4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OQ4
  • Community annotation for 5OQ4 at PDBWiki (http://pdbwiki.org)

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