5OTT Signaling Protein date Aug 22, 2017
title Extracellular Domain Of Glp-1 Receptor In Complex With Exend Variant Gly2hcsthr5hcs
authors S.Mortensen
compound source
Molecule: Glucagon-Like Peptide 1 Receptor
Chain: A
Fragment: Extracellular Domain, Unp Residues 24-139
Synonym: Glp-1r
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Glp1r
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Exendin-4
Chain: B
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Heloderma Suspectum
Organism_common: Gila Monster
Organism_taxid: 8554
symmetry Space Group: I 2 2 2
R_factor 0.180 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.690 62.920 118.550 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.92 Å
ligand HCS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referencealpha-Helix or beta-Turn? An Investigation into N-Terminally Constrained Analogues of Glucagon-like Peptide 1 (GLP-1) and Exendin-4., Oddo A, Mortensen S, Thogersen H, De Maria L, Hennen S, McGuire JN, Kofoed J, Linderoth L, Reedtz-Runge S, Biochemistry. 2018 Jun 21. doi: 10.1021/acs.biochem.8b00105. PMID:29877701
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (5ott.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 5OTT
  • CSU: Contacts of Structural Units for 5OTT
  • Structure Factors (293 Kb)
  • Retrieve 5OTT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OTT from S2C, [Save to disk]
  • View 5OTT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OTT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ott_A] [5ott_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OTT
  • Community annotation for 5OTT at PDBWiki (http://pdbwiki.org)

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