5OTW Signaling Protein date Aug 22, 2017
title Extracellular Domain Of Glp-1 Receptor In Complex With Glp-1 Ala8hcsthr11cys
authors S.Mortensen
compound source
Molecule: Glucagon-Like Peptide 1 Receptor
Chain: C, A
Fragment: Extracellular Domain, Unp Residues 24-139
Synonym: Glp-1r
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Glp1r
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Glucagon
Chain: D, B
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.184 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.260 81.200 42.740 90.00 98.67 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand HCS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referencealpha-Helix or beta-Turn? An Investigation into N-Terminally Constrained Analogues of Glucagon-like Peptide 1 (GLP-1) and Exendin-4., Oddo A, Mortensen S, Thogersen H, De Maria L, Hennen S, McGuire JN, Kofoed J, Linderoth L, Reedtz-Runge S, Biochemistry. 2018 Jun 21. doi: 10.1021/acs.biochem.8b00105. PMID:29877701
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (5otw.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (5otw.pdb2.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 5OTW
  • CSU: Contacts of Structural Units for 5OTW
  • Structure Factors (291 Kb)
  • Retrieve 5OTW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OTW from S2C, [Save to disk]
  • View 5OTW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OTW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5otw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5otw_D] [5otw_A] [5otw_C] [5otw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OTW
  • Community annotation for 5OTW at PDBWiki (http://pdbwiki.org)

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