5OVP Protein Binding date Aug 29, 2017
title Pdz Domain From Rat Shank3 Bound To The C Terminus Of Cirl
authors S.K.Ponna, M.Myllykoski, T.M.Boeckers, P.Kursula
compound source
Molecule: Sh3 And Multiple Ankyrin Repeat Domains Protein 3
Chain: A
Fragment: Pdz Domain, Unp Residues 570-664
Synonym: Shank3,Proline-Rich Synapse-Associated Protein 2,P Spank-2;
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Shank3, Prosap2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Adhesion G Protein-Coupled Receptor L1
Chain: B
Fragment: Unp Residues 1510-1515
Synonym: Calcium-Independent Alpha-Latrotoxin Receptor 1,Ci Latrophilin-1;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
symmetry Space Group: P 32 1 2
R_factor 0.193 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.090 32.090 150.220 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand ACE enzyme
Primary referenceStructural basis for PDZ domain interactions in the post-synaptic density scaffolding protein Shank3., Ponna SK, Ruskamo S, Myllykoski M, Keller C, Boeckers TM, Kursula P, J Neurochem. 2018 Feb 23. doi: 10.1111/jnc.14322. PMID:29473168
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (5ovp.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 5OVP
  • CSU: Contacts of Structural Units for 5OVP
  • Structure Factors (284 Kb)
  • Retrieve 5OVP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OVP from S2C, [Save to disk]
  • View 5OVP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OVP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ovp_B] [5ovp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OVP
  • Community annotation for 5OVP at PDBWiki (http://pdbwiki.org)

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